PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G194500.1.p
Common NameSb03g025780, SORBIDRAFT_03g025780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 690aa    MW: 74290.9 Da    PI: 5.025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G194500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08487508526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+++  +G C +Gd+CkF+H+
  Sobic.003G194500.1.p 487 ECHNYKNNGMCARGDKCKFSHV 508
                           6********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.23428455IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028429454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5430453IPR000571Zinc finger, CCCH-type
SMARTSM003560.4457483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535457484IPR000571Zinc finger, CCCH-type
SMARTSM003560.028485509IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5487508IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.943487510IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4488507IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MEDALAPPSV APTPSALAAA AVFTRRRSHL DSASFRTLSR LFSHCLHINQ SPCGIAPPEP  60
EPVAADPVGG DSDDSPERPN GADCDRLKDV EIEAADAGGL SLYGAVYQPA AANPTLDLGE  120
SEALKHEGAD AVLVVESTSG MTRAEVEESA ALVVESTSCK TSAEVEESAV VAGLVAVEDL  180
SLKSVESLLG TKVDESVEVA VGDDEGRLLL EAMMTDFTGL IDDVDAGVIS AQSCAVSAGD  240
LQNSKASEES KQLDGGIEEG EPLRNCDHEQ NGGGGFEEGE IEGEFQDFGS EESVDSEHGD  300
EDGEDEKLEG NSISRGSGPD KTCDHGTQFG NLHSTPEIGN DDLILNRDAI VRGDAQIPVT  360
RAQAVTYDDV VDWNENPLPD NEAPNPGKKR KRTQTEQRKA KKTKNKRINR ALQQIADGVR  420
RPKLTRVIKP KKPCYFYDHG KCQQGNNCKY SHDFTPSTKS KPCTHFACGS CLKGEGCPYD  480
HELSKYECHN YKNNGMCARG DKCKFSHVMR TTEGTPTQDA KTSDVSLAYE KTNLREHTRS  540
QKNTTVHNGA PSSSILRNLT GVSSKSQNVS NRIPKGVQFR PFGKGQSNLS SLHLDALSME  600
KQRNANGTQH NLGGHEAERQ KIVKQNYQKP NLLLEDKNSS KEATRHPCSD LKKTTLPVDS  660
IATPGSIHTQ HEVSEASRIL QEFLFGAGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387392KKRKRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.135380.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4699930.0JX469993.1 Zea mays subsp. mays clone UT3353 C3H-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455823.10.0hypothetical protein SORBIDRAFT_03g025780
SwissprotQ657B31e-164C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLC5XNS10.0C5XNS1_SORBI; Putative uncharacterized protein Sb03g025780
STRINGSb03g025780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Representative plantOGRP81611212